Variant report

Variant	rs11089485
Chromosome Location	chr22:31372850-31372851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31372163..31374495-chr22:31479554..31481845,2	K562	blood:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OSBP2-2	chr22:31371156-31374831	ENSG00000253352
2	lnc-OSBP2-2	chr22:31371156-31375337	XLOC_014209
3	lnc-OSBP2-2	chr22:31371156-31375327	XLOC_014209
4	lnc-OSBP2-2	chr22:31371156-31375377	XLOC_014209
5	lnc-OSBP2-2	chr22:31371156-31374831	ENSG00000253352.3
6	lnc-OSBP2-2	chr22:31371199-31375261	NONHSAT084830
7	lnc-OSBP2-2	chr22:31371156-31375381	ENSG00000253352.4
8	lnc-MORC2-2	chr22:31372501-31372918	ENSG00000269987.1

No data

Variant related genes	Relation type
ENSG00000183963	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11089483	1.00[CEU][hapmap]
rs12166521	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12166797	1.00[CEU][hapmap]
rs12167130	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12168605	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16989230	1.00[CEU][hapmap]
rs5997890	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31365800-31375200	ZNF genes & repeats	Fetal Brain Male	brain
2	chr22:31366000-31373000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr22:31366000-31373400	ZNF genes & repeats	Fetal Muscle Leg	muscle
4	chr22:31366200-31373400	ZNF genes & repeats	Fetal Lung	lung
5	chr22:31366200-31375800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr22:31366400-31373200	ZNF genes & repeats	Primary B cells from peripheral blood	blood
7	chr22:31366400-31374000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr22:31366400-31374200	ZNF genes & repeats	GM12878-XiMat	blood
9	chr22:31366400-31374600	ZNF genes & repeats	Primary B cells from cord blood	blood
10	chr22:31366400-31375000	ZNF genes & repeats	Primary T cells from cord blood	blood
11	chr22:31366400-31375200	ZNF genes & repeats	Fetal Brain Female	brain
12	chr22:31366400-31376800	ZNF genes & repeats	Brain Germinal Matrix	brain
13	chr22:31366600-31374400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr22:31366600-31375200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr22:31366600-31376400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
16	chr22:31366800-31373000	ZNF genes & repeats	Fetal Kidney	kidney
17	chr22:31366800-31380800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr22:31367000-31373800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr22:31367000-31374400	ZNF genes & repeats	A549	lung
20	chr22:31367000-31374800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr22:31367000-31375200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
22	chr22:31367200-31373400	ZNF genes & repeats	Adipose Nuclei	Adipose
23	chr22:31367200-31374000	Strong transcription	Osteobl	bone
24	chr22:31367200-31374200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
25	chr22:31367200-31376000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
26	chr22:31367400-31373800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
27	chr22:31367400-31374800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr22:31367600-31374200	Strong transcription	H9 Cell Line	embryonic stem cell
29	chr22:31367600-31374400	Strong transcription	HSMMtube	muscle
30	chr22:31367600-31374800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
31	chr22:31367600-31374800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
32	chr22:31367600-31375600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
33	chr22:31367600-31376000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
34	chr22:31367800-31374600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr22:31368000-31373000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
36	chr22:31368000-31373200	Strong transcription	Placenta	Placenta
37	chr22:31368000-31373600	ZNF genes & repeats	Colon Smooth Muscle	Colon
38	chr22:31368000-31374600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr22:31368600-31375000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr22:31369000-31374000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr22:31369600-31373000	ZNF genes & repeats	Fetal Heart	heart
42	chr22:31370400-31373000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
43	chr22:31370600-31373000	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr22:31371000-31373600	ZNF genes & repeats	HMEC	breast
45	chr22:31371000-31374200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
46	chr22:31371000-31374600	ZNF genes & repeats	HSMM	muscle
47	chr22:31371200-31374800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr22:31371400-31373000	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr22:31371600-31373200	Weak transcription	Hela-S3	cervix
50	chr22:31371800-31373200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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