Variant report

Variant	rs61736799
Chromosome Location	chr22:31591512-31591513
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12158256	1.00[EUR][1000 genomes]
rs12158662	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12170790	1.00[EUR][1000 genomes]
rs2232171	1.00[EUR][1000 genomes]
rs2232180	1.00[EUR][1000 genomes]
rs28428739	1.00[EUR][1000 genomes]
rs35239241	1.00[EUR][1000 genomes]
rs56686418	1.00[EUR][1000 genomes]
rs5994374	1.00[EUR][1000 genomes]
rs5997890	1.00[EUR][1000 genomes]
rs5997936	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9621146	1.00[EUR][1000 genomes]
rs9621150	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459871	chr22:31551160-31680624	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
2	nsv588893	chr22:31551160-31680624	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	nsv1067003	chr22:31558663-31697093	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31557400-31595200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr22:31557400-31597800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr22:31557600-31591800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr22:31558800-31606000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr22:31569800-31591600	Weak transcription	Small Intestine	intestine
6	chr22:31570000-31606400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr22:31570400-31597800	Weak transcription	HUVEC	blood vessel
8	chr22:31572200-31600000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr22:31574400-31601600	Weak transcription	Fetal Heart	heart
10	chr22:31575800-31591600	Weak transcription	NH-A	brain
11	chr22:31575800-31602600	Weak transcription	Stomach Mucosa	stomach
12	chr22:31575800-31607600	Weak transcription	Hela-S3	cervix
13	chr22:31576000-31607800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr22:31576000-31607800	Weak transcription	A549	lung
15	chr22:31579200-31607400	Weak transcription	K562	blood
16	chr22:31580800-31607600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr22:31581000-31592800	Strong transcription	Fetal Muscle Leg	muscle
18	chr22:31581000-31593000	Strong transcription	Primary T cells from cord blood	blood
19	chr22:31581000-31599200	Strong transcription	Primary T helper cells PMA-I stimulated	--
20	chr22:31581400-31607800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr22:31582400-31602400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr22:31582600-31594000	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr22:31582800-31594200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr22:31582800-31603600	Strong transcription	Liver	Liver
25	chr22:31583000-31598800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr22:31584000-31608200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr22:31584800-31595200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr22:31584800-31597800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr22:31585600-31592200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr22:31585600-31593000	Strong transcription	Fetal Intestine Large	intestine
31	chr22:31585600-31599200	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr22:31585600-31599800	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr22:31585600-31601200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr22:31586000-31593000	Strong transcription	Primary B cells from cord blood	blood
35	chr22:31586000-31603800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr22:31586400-31595200	Weak transcription	HMEC	breast
37	chr22:31586600-31592800	Strong transcription	Thymus	Thymus
38	chr22:31587000-31599200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr22:31587000-31602200	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr22:31587600-31596000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr22:31588000-31593000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr22:31588200-31606600	Strong transcription	Fetal Stomach	stomach
43	chr22:31588400-31592800	Strong transcription	Fetal Brain Female	brain
44	chr22:31588400-31594200	Strong transcription	Fetal Muscle Trunk	muscle
45	chr22:31588400-31603400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr22:31588600-31592200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr22:31588600-31593000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr22:31588600-31599800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr22:31588600-31606400	Strong transcription	Fetal Intestine Small	intestine
50	chr22:31588800-31594200	Strong transcription	Skeletal Muscle Female	skeletal muscle

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