Variant report

Variant	rs60277694
Chromosome Location	chr3:49781727-49781728
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:49780730..49783589-chr3:49785334..49787820,2	K562	blood:

Variant related genes	Relation type
ENSG00000176095	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57601324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73832790	1.00[AMR][1000 genomes]
rs73834007	1.00[AMR][1000 genomes]
rs73834122	1.00[AMR][1000 genomes]
rs7641149	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1796352	chr3:49687101-49949959	Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	90 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49762600-49781800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr3:49762600-49785200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:49762600-49809000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr3:49763000-49784800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:49764000-49781800	Strong transcription	Fetal Muscle Leg	muscle
6	chr3:49765800-49785800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr3:49767600-49787800	Strong transcription	Duodenum Mucosa	Duodenum
8	chr3:49768200-49787600	Strong transcription	Primary B cells from peripheral blood	blood
9	chr3:49770600-49782000	Strong transcription	Fetal Intestine Small	intestine
10	chr3:49772600-49785400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:49772600-49791600	Weak transcription	Right Atrium	heart
12	chr3:49774000-49788200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr3:49775600-49783200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr3:49775600-49783400	Weak transcription	NH-A	brain
15	chr3:49775600-49788200	Weak transcription	Stomach Mucosa	stomach
16	chr3:49775600-49817000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr3:49775800-49782000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr3:49775800-49810200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr3:49775800-49823000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr3:49776000-49782200	Weak transcription	Brain Anterior Caudate	brain
21	chr3:49776000-49783400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr3:49776000-49783400	Weak transcription	Right Ventricle	heart
23	chr3:49776000-49783400	Weak transcription	HUVEC	blood vessel
24	chr3:49776000-49784000	Weak transcription	A549	lung
25	chr3:49776000-49784600	Weak transcription	Left Ventricle	heart
26	chr3:49776000-49785200	Weak transcription	GM12878-XiMat	blood
27	chr3:49776000-49789400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr3:49776000-49791200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr3:49776000-49791800	Weak transcription	Psoas Muscle	Psoas
30	chr3:49776200-49782000	Weak transcription	K562	blood
31	chr3:49776200-49783400	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr3:49776200-49784200	Weak transcription	Brain Hippocampus Middle	brain
33	chr3:49776200-49784800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr3:49776200-49784800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr3:49776200-49784800	Weak transcription	Aorta	Aorta
36	chr3:49776200-49784800	Weak transcription	Liver	Liver
37	chr3:49776200-49784800	Weak transcription	Brain Germinal Matrix	brain
38	chr3:49776200-49784800	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr3:49776200-49785200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr3:49776200-49785200	Weak transcription	Colonic Mucosa	Colon
41	chr3:49776200-49790400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr3:49776200-49799000	Weak transcription	Fetal Heart	heart
43	chr3:49776200-49802000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr3:49776400-49783400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr3:49776400-49783400	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr3:49776400-49783400	Weak transcription	Ovary	ovary
47	chr3:49776400-49783600	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:49776400-49784000	Weak transcription	HepG2	liver
49	chr3:49776400-49784200	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr3:49776400-49784200	Weak transcription	Fetal Brain Female	brain

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