Variant report

Variant	rs73834007
Chromosome Location	chr3:49640374-49640375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57601324	1.00[AMR][1000 genomes]
rs60277694	1.00[AMR][1000 genomes]
rs7641149	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508217	chr3:49615446-49769896	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:49637400-49640600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:49637800-49653600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:49638000-49644600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:49638000-49647200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:49639200-49643800	Weak transcription	Brain Anterior Caudate	brain
6	chr3:49639400-49640600	Enhancers	Placenta	Placenta
7	chr3:49639400-49641200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:49639600-49640400	Enhancers	Brain Cingulate Gyrus	brain
9	chr3:49639600-49640600	Enhancers	Hela-S3	cervix
10	chr3:49639600-49640800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:49639600-49641200	Enhancers	HMEC	breast
12	chr3:49639600-49641200	Enhancers	NHEK	skin
13	chr3:49639600-49641400	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr3:49639600-49641600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr3:49639800-49644000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr3:49639800-49644000	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:49639800-49644600	Weak transcription	NHDF-Ad	bronchial
18	chr3:49640000-49640400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr3:49640000-49641200	Enhancers	Primary T cells fromperipheralblood	blood
20	chr3:49640200-49640600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
21	chr3:49640200-49640600	Enhancers	Brain Angular Gyrus	brain
22	chr3:49640200-49641000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr3:49640200-49641200	Enhancers	Primary T cells from cord blood	blood
24	chr3:49640200-49641200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr3:49640200-49641200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:49640200-49641200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:49640200-49641400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:49640200-49641400	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr3:49640200-49641400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr3:49640200-49641400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr3:49640200-49641400	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr3:49640200-49641800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr3:49640200-49642000	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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