Variant report

Variant	rs60283861
Chromosome Location	chr3:23855057-23855058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:23852479..23855481-chr3:23956917..23960502,4	MCF-7	breast:
2	chr3:23853713..23855687-chr3:23855712..23857598,2	K562	blood:
3	chr3:23854561..23857291-chr3:23885014..23887485,2	K562	blood:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction
ENSG00000197885	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs35663853	1.00[EUR][1000 genomes]
rs55867849	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56283624	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60740455	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61652123	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73148287	1.00[EUR][1000 genomes]
rs73148289	1.00[EUR][1000 genomes]
rs73150213	1.00[EUR][1000 genomes]
rs73150216	1.00[EUR][1000 genomes]
rs73150220	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73150243	1.00[EUR][1000 genomes]
rs73150260	1.00[EUR][1000 genomes]
rs7634106	1.00[EUR][1000 genomes]
rs9883672	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834637	chr3:23703928-23886144	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23849800-23855400	Weak transcription	Hela-S3	cervix
2	chr3:23850000-23856400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:23852800-23859600	Weak transcription	Gastric	stomach
4	chr3:23853000-23856400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr3:23853000-23856400	Weak transcription	Psoas Muscle	Psoas
6	chr3:23853000-23856600	Weak transcription	Small Intestine	intestine
7	chr3:23853000-23857000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:23853000-23857000	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:23853000-23857000	Weak transcription	NHLF	lung
10	chr3:23853000-23857400	Weak transcription	Colonic Mucosa	Colon
11	chr3:23853000-23858000	Weak transcription	Lung	lung
12	chr3:23853000-23859000	Weak transcription	Placenta	Placenta
13	chr3:23853000-23860000	Weak transcription	Pancreas	Pancrea
14	chr3:23853000-23860800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:23853000-23861000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr3:23853000-23861200	Weak transcription	Left Ventricle	heart
17	chr3:23853000-23861400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:23853000-23862400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr3:23853000-23862600	Weak transcription	Ovary	ovary
20	chr3:23853000-23862800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr3:23853000-23865800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:23853000-23866200	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr3:23853000-23867200	Weak transcription	Aorta	Aorta
24	chr3:23853000-23867800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:23853000-23867800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:23853000-23867800	Weak transcription	Esophagus	oesophagus
27	chr3:23853000-23867800	Weak transcription	Fetal Brain Female	brain
28	chr3:23853000-23867800	Weak transcription	Right Atrium	heart
29	chr3:23853000-23868000	Weak transcription	NH-A	brain
30	chr3:23853000-23868400	Weak transcription	HSMMtube	muscle
31	chr3:23853000-23876000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:23853000-23876000	Weak transcription	Fetal Stomach	stomach
33	chr3:23853000-23882000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:23853000-23887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:23853200-23855200	Weak transcription	Fetal Intestine Large	intestine
36	chr3:23853200-23856600	Weak transcription	Right Ventricle	heart
37	chr3:23853200-23857000	Weak transcription	Brain Substantia Nigra	brain
38	chr3:23853200-23858400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr3:23853200-23859400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:23853200-23861000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr3:23853200-23861000	Weak transcription	Brain Germinal Matrix	brain
42	chr3:23853200-23861200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr3:23853200-23861200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr3:23853200-23893200	Weak transcription	Thymus	Thymus
45	chr3:23853400-23856600	Weak transcription	HUVEC	blood vessel
46	chr3:23853400-23857000	Weak transcription	Brain Angular Gyrus	brain
47	chr3:23853400-23857000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr3:23853400-23857400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr3:23853400-23859600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr3:23853400-23864400	Weak transcription	H1 Cell Line	embryonic stem cell

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