Variant report

Variant	rs73150216
Chromosome Location	chr3:23881874-23881875
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:23849778..23851567-chr3:23881436..23883574,2	K562	blood:
2	chr3:23881533..23883642-chr3:23958620..23961228,2	MCF-7	breast:
3	chr3:23881781..23883313-chr3:23887444..23889365,2	MCF-7	breast:
4	chr3:23877439..23880001-chr3:23880133..23883001,2	K562	blood:
5	chr3:23881008..23882958-chr3:23892400..23894853,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000174748	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs35663853	1.00[EUR][1000 genomes]
rs55867849	1.00[EUR][1000 genomes]
rs56283624	1.00[EUR][1000 genomes]
rs60283861	1.00[EUR][1000 genomes]
rs60740455	1.00[EUR][1000 genomes]
rs61652123	1.00[EUR][1000 genomes]
rs73148287	1.00[EUR][1000 genomes]
rs73148289	1.00[EUR][1000 genomes]
rs73150213	1.00[EUR][1000 genomes]
rs73150220	1.00[EUR][1000 genomes]
rs73150243	1.00[EUR][1000 genomes]
rs73150260	1.00[EUR][1000 genomes]
rs7634106	1.00[EUR][1000 genomes]
rs9883672	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv834637	chr3:23703928-23886144	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23853000-23882000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:23853000-23887400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:23853200-23893200	Weak transcription	Thymus	Thymus
4	chr3:23853400-23885600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr3:23855000-23900200	Weak transcription	HSMM	muscle
6	chr3:23857600-23894000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:23857600-23900000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr3:23862000-23882000	Weak transcription	Fetal Intestine Large	intestine
9	chr3:23868000-23884800	Weak transcription	NHDF-Ad	bronchial
10	chr3:23868000-23897800	Weak transcription	HUVEC	blood vessel
11	chr3:23868200-23883600	Weak transcription	Left Ventricle	heart
12	chr3:23868200-23893000	Weak transcription	Fetal Thymus	thymus
13	chr3:23871200-23883600	Weak transcription	Ovary	ovary
14	chr3:23871200-23899000	Weak transcription	Pancreas	Pancrea
15	chr3:23871400-23897400	Weak transcription	Primary T cells from cord blood	blood
16	chr3:23872000-23897400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:23872600-23886800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr3:23873000-23887800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr3:23873800-23893000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:23873800-23898000	Weak transcription	NHEK	skin
21	chr3:23874400-23882200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr3:23874400-23888000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr3:23876200-23883600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr3:23876800-23882000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr3:23876800-23906800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:23877000-23882000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr3:23878200-23882000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:23878200-23883600	Weak transcription	A549	lung
29	chr3:23878400-23882000	Weak transcription	Small Intestine	intestine
30	chr3:23878400-23883200	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr3:23878400-23887800	Weak transcription	Right Ventricle	heart
32	chr3:23878400-23898000	Weak transcription	Liver	Liver
33	chr3:23878600-23884800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr3:23878600-23900400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr3:23878800-23882200	Weak transcription	Brain Hippocampus Middle	brain
36	chr3:23878800-23893800	Weak transcription	Fetal Stomach	stomach
37	chr3:23878800-23900200	Weak transcription	Fetal Kidney	kidney
38	chr3:23879000-23886000	Weak transcription	Brain Substantia Nigra	brain
39	chr3:23879000-23898000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr3:23879000-23898200	Weak transcription	Right Atrium	heart
41	chr3:23879000-23907400	Weak transcription	K562	blood
42	chr3:23879200-23898200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr3:23879400-23885200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr3:23879400-23886200	Weak transcription	Fetal Lung	lung
45	chr3:23879400-23893000	Weak transcription	Primary B cells from cord blood	blood
46	chr3:23879600-23886600	Weak transcription	Primary B cells from peripheral blood	blood
47	chr3:23879800-23882000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr3:23879800-23884600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:23880000-23885000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr3:23880200-23882000	Weak transcription	Psoas Muscle	Psoas

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