Variant report

Variant	rs60289110
Chromosome Location	chr12:9188292-9188293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11831631	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11831793	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11832509	1.00[AMR][1000 genomes]
rs11833184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11833893	1.00[AMR][1000 genomes]
rs1805684	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805686	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1805694	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3026223	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3026224	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3026228	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3026231	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35040316	1.00[AMR][1000 genomes]
rs57018529	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58097118	1.00[AMR][1000 genomes]
rs58565807	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60105910	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73240200	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73240201	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241907	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241991	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73241999	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244203	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244209	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244216	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244223	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244234	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73244245	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73246318	1.00[AMR][1000 genomes]
rs73246327	1.00[AMR][1000 genomes]
rs73246334	1.00[AMR][1000 genomes]
rs73246337	1.00[AMR][1000 genomes]
rs73246344	1.00[AMR][1000 genomes]
rs73246352	1.00[AMR][1000 genomes]
rs73246383	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832327	chr12:9081779-9246220	Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1045317	chr12:9113216-9544655	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9178400-9216400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:9183800-9189200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr12:9184400-9189600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr12:9185600-9189000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr12:9185600-9189800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:9185800-9189200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr12:9186200-9189000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr12:9186400-9188800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr12:9186600-9188800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr12:9186600-9188800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr12:9186800-9189000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr12:9187000-9188800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr12:9187000-9188800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr12:9188000-9198400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr12:9188200-9188400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr12:9188200-9194600	Enhancers	Primary T helper cells PMA-I stimulated	--

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