Variant report
Variant | rs60293432 |
---|---|
Chromosome Location | chr19:21180878-21180879 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10406359 | 1.00[AMR][1000 genomes] |
rs10418266 | 1.00[AMR][1000 genomes] |
rs17447963 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2098682 | 1.00[AMR][1000 genomes] |
rs57505697 | 1.00[AMR][1000 genomes] |
rs57601660 | 1.00[AMR][1000 genomes] |
rs57981503 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58002329 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58148410 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs59609198 | 1.00[AMR][1000 genomes] |
rs60170851 | 1.00[AMR][1000 genomes] |
rs61179921 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7246695 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7247066 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7247670 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7248199 | 1.00[AMR][1000 genomes] |
rs7259985 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73531882 | 1.00[AMR][1000 genomes] |
rs73531886 | 1.00[AMR][1000 genomes] |
rs73531897 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73531902 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73533603 | 1.00[AMR][1000 genomes] |
rs73533607 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73533690 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540426 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540428 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73540432 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73542615 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73542629 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73542640 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73542656 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73544576 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73546304 | 1.00[AMR][1000 genomes] |
rs73546306 | 1.00[AMR][1000 genomes] |
rs8104371 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs8108394 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1062776 | chr19:20818886-21273361 | Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
2 | nsv932110 | chr19:20818886-21278952 | Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
3 | esv2763043 | chr19:20818886-21290543 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
4 | esv3385528 | chr19:21030777-21495566 | Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
5 | nsv817536 | chr19:21041855-21348237 | Strong transcription Enhancers Genic enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
6 | esv1850387 | chr19:21109758-21294264 | Active TSS ZNF genes & repeats Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr19:21177400-21182600 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
2 | chr19:21180400-21182200 | Weak transcription | Stomach Smooth Muscle | stomach |
3 | chr19:21180600-21182400 | Enhancers | Dnd41 | blood |
4 | chr19:21180800-21181400 | Active TSS | Spleen | Spleen |