Variant report

Variant	rs60294805
Chromosome Location	chr10:25199337-25199338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25195531..25198716-chr10:25198816..25202257,4	K562	blood:
2	chr10:25174022..25176937-chr10:25198319..25200197,2	K562	blood:

Variant related genes	Relation type
ENSG00000240294	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11014306	0.91[ASN][1000 genomes]
rs11014307	0.91[ASN][1000 genomes]
rs11014308	0.91[ASN][1000 genomes]
rs11014309	0.91[ASN][1000 genomes]
rs59201594	1.00[ASN][1000 genomes]
rs60347372	1.00[ASN][1000 genomes]
rs61645903	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053278	chr10:25140776-25269093	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25177400-25200400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:25191400-25200800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr10:25191600-25200200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:25191600-25200800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr10:25191600-25201400	Weak transcription	Fetal Lung	lung
6	chr10:25191600-25202600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:25191600-25240600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr10:25192200-25204400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr10:25193400-25210200	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:25195200-25203400	Weak transcription	Aorta	Aorta
11	chr10:25195400-25223400	Weak transcription	Fetal Brain Female	brain
12	chr10:25196400-25212000	Weak transcription	Fetal Stomach	stomach
13	chr10:25197200-25202000	Enhancers	K562	blood
14	chr10:25197400-25199600	Enhancers	NHEK	skin
15	chr10:25197400-25200400	Enhancers	NHDF-Ad	bronchial
16	chr10:25197400-25205400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:25197600-25199400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:25197800-25201600	Weak transcription	Gastric	stomach
19	chr10:25197800-25204600	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr10:25198000-25200800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr10:25198000-25201400	Weak transcription	NHLF	lung
22	chr10:25198000-25204200	Weak transcription	Brain Angular Gyrus	brain
23	chr10:25198200-25199800	Weak transcription	Primary B cells from peripheral blood	blood
24	chr10:25198200-25201600	Weak transcription	Small Intestine	intestine
25	chr10:25198200-25204200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr10:25198200-25228000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:25198400-25199400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:25198400-25199600	Enhancers	A549	lung
29	chr10:25198400-25200200	Weak transcription	NH-A	brain
30	chr10:25198400-25201200	Weak transcription	HUVEC	blood vessel
31	chr10:25198400-25202800	Weak transcription	Osteobl	bone
32	chr10:25198400-25203800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:25198400-25204600	Weak transcription	Fetal Intestine Small	intestine
34	chr10:25198400-25217800	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr10:25198600-25200000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr10:25198600-25201200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr10:25198800-25199800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr10:25198800-25202600	Weak transcription	Stomach Mucosa	stomach
39	chr10:25199000-25201200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:25199000-25201800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:25199000-25201800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:25199000-25210200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:25199200-25200200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:25199200-25201400	Weak transcription	HMEC	breast
45	chr10:25199200-25201600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr10:25199200-25210000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links