Variant report

Variant	rs60311444
Chromosome Location	chr1:172796968-172796969
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10912483	0.83[AFR][1000 genomes]
rs12074518	0.83[AFR][1000 genomes]
rs55680918	0.83[AFR][1000 genomes]
rs55684370	0.92[AFR][1000 genomes]
rs74125944	0.88[AFR][1000 genomes]
rs74125985	0.88[AFR][1000 genomes]
rs74125986	0.92[AFR][1000 genomes]
rs74125987	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947552	chr1:172794244-172807477	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172788800-172797000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr1:172789000-172797000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:172791200-172806200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:172795000-172797200	Enhancers	Dnd41	blood
5	chr1:172795200-172797400	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr1:172795200-172797600	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr1:172795200-172797800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:172795400-172797800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr1:172795400-172797800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr1:172795400-172798200	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr1:172795400-172798200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:172795600-172797200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:172795800-172797000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr1:172796000-172797000	Enhancers	Duodenum Mucosa	Duodenum
15	chr1:172796000-172797200	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr1:172796000-172797400	Enhancers	Fetal Lung	lung
17	chr1:172796000-172797800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr1:172796000-172798000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr1:172796000-172806200	Weak transcription	HMEC	breast
20	chr1:172796000-172813800	Weak transcription	Small Intestine	intestine
21	chr1:172796200-172797000	Enhancers	NHDF-Ad	bronchial
22	chr1:172796600-172797000	Weak transcription	Primary hematopoietic stem cells	blood
23	chr1:172796600-172797400	Enhancers	Primary T cells from cord blood	blood
24	chr1:172796600-172797600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr1:172796800-172797800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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