Variant report

Variant	rs60314157
Chromosome Location	chr17:16094877-16094878
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs57479165	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58182068	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58206797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58517927	0.83[AMR][1000 genomes]
rs59239162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59543390	1.00[EUR][1000 genomes]
rs59647552	1.00[EUR][1000 genomes]
rs59805617	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60453431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60636875	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60812331	1.00[EUR][1000 genomes]
rs60842225	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61374610	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7209874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7209920	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276056	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276059	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276071	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276077	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73276085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73278155	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73278190	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280217	1.00[EUR][1000 genomes]
rs73280221	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280227	1.00[EUR][1000 genomes]
rs73280233	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280237	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280240	1.00[EUR][1000 genomes]
rs73280256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280272	1.00[EUR][1000 genomes]
rs73280300	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73280301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281909	1.00[EUR][1000 genomes]
rs73281922	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73281961	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
2	esv3330182	chr17:15652014-16569534	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
3	esv3446844	chr17:15654843-16572246	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	177 gene(s)	inside rSNPs	diseases
4	nsv1063459	chr17:15804228-16543593	Weak transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
5	nsv1064878	chr17:15869557-16097241	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv1055173	chr17:15875935-16097241	Flanking Active TSS Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv833377	chr17:15912013-16104515	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv522169	chr17:15923709-16147821	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
9	nsv907712	chr17:15981874-16103426	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv907713	chr17:15981874-16127206	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
11	nsv907714	chr17:15990013-16110384	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv907715	chr17:16019978-16206540	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
13	nsv907716	chr17:16068422-16116835	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv907717	chr17:16076898-16239832	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	44 gene(s)	inside rSNPs	diseases
15	nsv907718	chr17:16080849-16143709	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
16	nsv960423	chr17:16089865-16112673	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16035800-16103400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr17:16039200-16096800	Weak transcription	K562	blood
3	chr17:16049200-16103400	Weak transcription	Spleen	Spleen
4	chr17:16049200-16108600	Weak transcription	Esophagus	oesophagus
5	chr17:16052200-16100400	Weak transcription	Ovary	ovary
6	chr17:16055200-16102600	Weak transcription	Brain Angular Gyrus	brain
7	chr17:16055400-16104000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr17:16055800-16102000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:16059400-16102400	Weak transcription	Small Intestine	intestine
10	chr17:16059400-16102400	Weak transcription	NHLF	lung
11	chr17:16059400-16102800	Weak transcription	Pancreas	Pancrea
12	chr17:16064000-16101000	Weak transcription	Lung	lung
13	chr17:16064600-16106000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr17:16075400-16096800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr17:16083600-16097000	Weak transcription	Brain Hippocampus Middle	brain
16	chr17:16084800-16098000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr17:16086000-16098000	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr17:16086600-16101600	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr17:16086600-16102400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr17:16086800-16102200	Weak transcription	Stomach Mucosa	stomach
21	chr17:16087200-16097600	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr17:16087200-16098000	Strong transcription	Fetal Intestine Large	intestine
23	chr17:16087200-16108200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:16087400-16097400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr17:16088000-16117000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr17:16088200-16097000	Weak transcription	Fetal Brain Male	brain
27	chr17:16088200-16101800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr17:16088200-16102200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr17:16088200-16116200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr17:16088400-16097200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr17:16088600-16096800	Strong transcription	Fetal Intestine Small	intestine
32	chr17:16088600-16097000	Strong transcription	Fetal Stomach	stomach
33	chr17:16088600-16101200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr17:16089400-16097000	Weak transcription	Fetal Kidney	kidney
35	chr17:16089400-16103400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr17:16089400-16104000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr17:16089600-16104400	Weak transcription	HSMMtube	muscle
38	chr17:16089600-16114600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr17:16090000-16095800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr17:16090000-16096200	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr17:16090000-16096200	Weak transcription	Brain Cingulate Gyrus	brain
42	chr17:16090000-16100200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr17:16090000-16116800	Weak transcription	NH-A	brain
44	chr17:16090200-16096200	Weak transcription	HSMM	muscle
45	chr17:16090400-16097400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr17:16090400-16102600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr17:16090400-16105200	Weak transcription	Colonic Mucosa	Colon
48	chr17:16090800-16096200	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr17:16090800-16097400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr17:16091000-16096200	Weak transcription	NHDF-Ad	bronchial

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