Variant report

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:45907496..45909076-chr17:45942924..45945465,2	K562	blood:
2	chr17:45942966..45946834-chr17:45959639..45963061,4	MCF-7	breast:
3	chr17:45908457..45910932-chr17:45940932..45943486,2	MCF-7	breast:
4	chr17:45938415..45940216-chr17:45942794..45944521,2	K562	blood:
5	chr17:45931856..45934572-chr17:45940574..45944336,3	K562	blood:
6	chr17:45918428..45920054-chr17:45942464..45944010,2	MCF-7	breast:
7	chr17:45943296..45945014-chr17:45970935..45972953,2	K562	blood:
8	chr17:45918706..45921396-chr17:45943154..45946269,3	K562	blood:
9	chr17:45926837..45930514-chr17:45942433..45945134,4	K562	blood:
10	chr17:45924111..45929589-chr17:45940263..45947435,9	MCF-7	breast:
11	chr17:45915665..45918178-chr17:45942121..45944578,2	K562	blood:
12	chr17:45942899..45944739-chr17:45959534..45961329,2	K562	blood:
13	chr17:45925854..45929036-chr17:45942221..45945490,4	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56078988	0.81[AFR][1000 genomes]
rs60224300	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498122	chr17:45763853-46064327	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv908573	chr17:45858487-45956073	Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv518892	chr17:45887951-46029432	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45935800-45946400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:45939600-45945400	Enhancers	Placenta	Placenta
3	chr17:45940800-45944000	Weak transcription	Right Ventricle	heart
4	chr17:45940800-45944200	Weak transcription	Spleen	Spleen
5	chr17:45941600-45944800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr17:45941800-45945400	Enhancers	Fetal Thymus	thymus
7	chr17:45941800-45946000	Enhancers	Placenta Amnion	Placenta Amnion
8	chr17:45942200-45948200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr17:45942400-45943800	Enhancers	K562	blood
10	chr17:45942400-45946600	Weak transcription	Hela-S3	cervix
11	chr17:45942600-45943600	Weak transcription	Esophagus	oesophagus
12	chr17:45942600-45944800	Enhancers	HMEC	breast
13	chr17:45942800-45944600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr17:45942800-45945200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr17:45942800-45945800	Enhancers	Fetal Heart	heart
16	chr17:45942800-45947000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr17:45943000-45944000	Weak transcription	NHDF-Ad	bronchial
18	chr17:45943000-45946400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr17:45943000-45950000	Weak transcription	HSMM	muscle
20	chr17:45943200-45947600	Weak transcription	A549	lung
21	chr17:45943400-45946600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

Quick Search: