The 2.0 version of rSNPBase

Variant report

Variant rs56078988
Chromosome Location chr17:45941615-45941616
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:45935800-45942200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
2 chr17:45935800-45946400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
3 chr17:45939600-45945400 Enhancers Placenta Placenta
4 chr17:45939800-45942000 Enhancers HMEC breast
5 chr17:45939800-45942000 Enhancers NHEK skin
6 chr17:45940000-45942000 Enhancers Breast Myoepithelial Primary Cells Breast
7 chr17:45940000-45942000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
8 chr17:45940000-45943200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
9 chr17:45940400-45942000 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr17:45940600-45941800 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr17:45940600-45941800 Weak transcription Fetal Thymus thymus
12 chr17:45940600-45942000 Weak transcription Primary T helper naive cells fromperipheralblood blood
13 chr17:45940600-45942000 Weak transcription Duodenum Mucosa Duodenum
14 chr17:45940600-45942000 Weak transcription Lung lung
15 chr17:45940600-45942000 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr17:45940600-45942200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr17:45940600-45942200 Weak transcription Fetal Lung lung
18 chr17:45940600-45942600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
19 chr17:45940800-45941800 Weak transcription Primary T helper cells PMA-I stimulated --
20 chr17:45940800-45941800 Weak transcription Placenta Amnion Placenta Amnion
21 chr17:45940800-45941800 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr17:45940800-45942000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr17:45940800-45942000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
24 chr17:45940800-45942000 Weak transcription Primary T cells from cord blood blood
25 chr17:45940800-45942000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
26 chr17:45940800-45942000 Weak transcription Esophagus oesophagus
27 chr17:45940800-45942000 Weak transcription HSMM muscle
28 chr17:45940800-45942000 Weak transcription HSMMtube muscle
29 chr17:45940800-45942000 Weak transcription Osteobl bone
30 chr17:45940800-45942200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
31 chr17:45940800-45942200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
32 chr17:45940800-45942400 Weak transcription K562 blood
33 chr17:45940800-45942600 Weak transcription Pancreas Pancrea
34 chr17:45940800-45944000 Weak transcription Right Ventricle heart
35 chr17:45940800-45944200 Weak transcription Spleen Spleen
36 chr17:45941000-45942000 Weak transcription Muscle Satellite Cultured Cells --
37 chr17:45941000-45942000 Weak transcription A549 lung
38 chr17:45941000-45942000 Weak transcription Hela-S3 cervix
39 chr17:45941600-45942000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
40 chr17:45941600-45942600 Enhancers Rectal Mucosa Donor 29 rectum
41 chr17:45941600-45942800 Enhancers Primary T regulatory cells fromperipheralblood blood
42 chr17:45941600-45943000 Enhancers NHDF-Ad bronchial
43 chr17:45941600-45944800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015