Variant report
| Variant | rs12942412 |
|---|---|
| Chromosome Location | chr17:46046150-46046151 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:46019800-46047600 | Weak transcription | Aorta | Aorta |
| 2 | chr17:46027200-46047200 | Weak transcription | Spleen | Spleen |
| 3 | chr17:46027600-46047400 | Weak transcription | Right Ventricle | heart |
| 4 | chr17:46027600-46047600 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
| 5 | chr17:46028000-46047400 | Weak transcription | Primary T helper naive cells fromperipheralblood | blood |
| 6 | chr17:46028000-46047600 | Weak transcription | Primary mononuclear cells fromperipheralblood | Blood |
| 7 | chr17:46035000-46047400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 8 | chr17:46036000-46047200 | Weak transcription | Stomach Smooth Muscle | stomach |
| 9 | chr17:46036600-46047800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
| 10 | chr17:46036800-46047400 | Weak transcription | Thymus | Thymus |
| 11 | chr17:46037800-46047400 | Weak transcription | Foreskin Melanocyte Primary Cells skin01 | Skin |
| 12 | chr17:46037800-46047400 | Enhancers | Fetal Intestine Small | intestine |
| 13 | chr17:46037800-46047800 | Enhancers | Fetal Intestine Large | intestine |
| 14 | chr17:46038000-46046400 | Weak transcription | K562 | blood |
| 15 | chr17:46039600-46047600 | Weak transcription | Primary T cells from cord blood | blood |
| 16 | chr17:46042800-46047800 | Weak transcription | Small Intestine | intestine |
| 17 | chr17:46043000-46046400 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 18 | chr17:46043000-46047800 | Enhancers | Pancreas | Pancrea |
| 19 | chr17:46043000-46047800 | Enhancers | Stomach Mucosa | stomach |
| 20 | chr17:46043200-46046400 | Weak transcription | Gastric | stomach |
| 21 | chr17:46044200-46047600 | Weak transcription | Liver | Liver |
| 22 | chr17:46044800-46047000 | Enhancers | IMR90 fetal lung fibroblasts Cell Line | lung |
| 23 | chr17:46044800-46047200 | Enhancers | Duodenum Mucosa | Duodenum |
| 24 | chr17:46044800-46048000 | Enhancers | Placenta | Placenta |
| 25 | chr17:46045000-46047800 | Enhancers | Sigmoid Colon | Sigmoid Colon |
| 26 | chr17:46045200-46047200 | Enhancers | Rectal Mucosa Donor 29 | rectum |
| 27 | chr17:46045200-46047600 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 28 | chr17:46045200-46047600 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 29 | chr17:46045400-46046200 | Weak transcription | Colonic Mucosa | Colon |
| 30 | chr17:46045400-46047200 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
| 31 | chr17:46045400-46047400 | Weak transcription | Colon Smooth Muscle | Colon |
| 32 | chr17:46045400-46047600 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 33 | chr17:46045400-46047600 | Weak transcription | HSMM | muscle |
| 34 | chr17:46045400-46047800 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
| 35 | chr17:46045400-46047800 | Weak transcription | Lung | lung |
| 36 | chr17:46045400-46048400 | Weak transcription | Placenta Amnion | Placenta Amnion |
| 37 | chr17:46045600-46046600 | Enhancers | A549 | lung |
| 38 | chr17:46045600-46047200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 39 | chr17:46045600-46047200 | Weak transcription | Esophagus | oesophagus |
| 40 | chr17:46045600-46047400 | Weak transcription | HepG2 | liver |
| 41 | chr17:46045600-46047600 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
| 42 | chr17:46045600-46047600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 43 | chr17:46045600-46047600 | Weak transcription | Osteobl | bone |
| 44 | chr17:46045600-46047800 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 45 | chr17:46045800-46047200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 46 | chr17:46045800-46047400 | Weak transcription | HMEC | breast |
| 47 | chr17:46045800-46047600 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 48 | chr17:46045800-46047600 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
| 49 | chr17:46045800-46047600 | Weak transcription | NHEK | skin |
| 50 | chr17:46045800-46047800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
