Variant report

Variant	rs35677091
Chromosome Location	chr17:46078378-46078379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46072351..46074224-chr17:46077019..46079438,2	MCF-7	breast:
2	chr17:46064933..46067351-chr17:46077390..46079029,2	K562	blood:
3	chr17:46064874..46067902-chr17:46077258..46079817,3	K562	blood:
4	chr17:46077674..46080583-chr17:46085279..46087507,2	MCF-7	breast:
5	chr17:46066387..46068128-chr17:46076064..46078648,2	MCF-7	breast:
6	chr17:46068180..46070484-chr17:46078345..46080253,2	K562	blood:

Variant related genes	Relation type
ENSG00000264701	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs12941306	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12942412	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12944699	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12945188	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12945362	1.00[AMR][1000 genomes]
rs12945768	1.00[AMR][1000 genomes]
rs12947761	1.00[AMR][1000 genomes]
rs12947966	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12948207	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16952687	1.00[AMR][1000 genomes]
rs34033530	1.00[AMR][1000 genomes]
rs34038169	1.00[AMR][1000 genomes]
rs34153693	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34166016	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34358803	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34601263	0.92[AFR][1000 genomes]
rs34632031	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34822864	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34958507	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35177469	1.00[AMR][1000 genomes]
rs35273388	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35350665	1.00[AMR][1000 genomes]
rs35534834	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35551276	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35647888	1.00[AMR][1000 genomes]
rs35711165	1.00[AMR][1000 genomes]
rs35751035	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35766594	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35778085	1.00[AMR][1000 genomes]
rs35795560	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35848720	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35928933	1.00[AMR][1000 genomes]
rs36059789	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36090279	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56078988	1.00[AMR][1000 genomes]
rs56363348	1.00[AMR][1000 genomes]
rs57864674	1.00[AMR][1000 genomes]
rs57948485	1.00[AMR][1000 genomes]
rs58974249	1.00[AMR][1000 genomes]
rs59483607	1.00[AMR][1000 genomes]
rs59727791	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60224300	1.00[AMR][1000 genomes]
rs60525548	1.00[AMR][1000 genomes]
rs6503951	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71369826	0.81[AFR][1000 genomes]
rs71377331	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377332	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377334	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71377338	1.00[AMR][1000 genomes]
rs71377341	1.00[AMR][1000 genomes]
rs71377342	1.00[AMR][1000 genomes]
rs71377352	1.00[AMR][1000 genomes]
rs73985416	1.00[AMR][1000 genomes]
rs73985417	1.00[AMR][1000 genomes]
rs73985418	1.00[AMR][1000 genomes]
rs73985419	1.00[AMR][1000 genomes]
rs73985421	1.00[AMR][1000 genomes]
rs73985422	1.00[AMR][1000 genomes]
rs73985424	1.00[AMR][1000 genomes]
rs73985479	1.00[AMR][1000 genomes]
rs8075711	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469808	chr17:46049868-46228673	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv482897	chr17:46049868-46228673	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46061800-46079600	Weak transcription	Right Atrium	heart
2	chr17:46068000-46079800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr17:46069000-46079600	Weak transcription	Fetal Thymus	thymus
4	chr17:46073200-46078800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr17:46073400-46081000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr17:46073800-46078800	Weak transcription	Brain Germinal Matrix	brain
7	chr17:46073800-46079600	Weak transcription	Esophagus	oesophagus
8	chr17:46074200-46078800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr17:46074200-46079600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr17:46074200-46079600	Weak transcription	K562	blood
11	chr17:46074200-46079800	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr17:46075600-46079000	Weak transcription	Adipose Nuclei	Adipose
13	chr17:46076400-46079400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr17:46076400-46084600	Enhancers	Fetal Brain Male	brain
15	chr17:46076800-46085600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr17:46077000-46078800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr17:46077000-46084000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr17:46077200-46078800	Weak transcription	GM12878-XiMat	blood
19	chr17:46077400-46078600	Weak transcription	HSMMtube	muscle
20	chr17:46077400-46079000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr17:46077400-46079200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr17:46077400-46079400	Weak transcription	Brain Anterior Caudate	brain
23	chr17:46077400-46079600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr17:46077400-46079600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr17:46077400-46079600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr17:46077400-46079600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr17:46077400-46079600	Weak transcription	HSMM	muscle
28	chr17:46077400-46079600	Weak transcription	NH-A	brain
29	chr17:46077400-46079800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr17:46077400-46080400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr17:46077600-46078600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr17:46077600-46078800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr17:46077600-46079000	Weak transcription	HUVEC	blood vessel
34	chr17:46077600-46079200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr17:46077600-46079200	Weak transcription	Fetal Muscle Trunk	muscle
36	chr17:46077600-46079200	Weak transcription	Fetal Muscle Leg	muscle
37	chr17:46077600-46079600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr17:46077600-46079600	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr17:46077600-46079600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr17:46077600-46079600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr17:46077600-46079600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr17:46077600-46079600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr17:46077600-46079600	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr17:46077600-46079600	Weak transcription	NHDF-Ad	bronchial
45	chr17:46077600-46079800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr17:46077600-46079800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr17:46077600-46079800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr17:46077600-46079800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr17:46077800-46078600	Weak transcription	Osteobl	bone
50	chr17:46077800-46078800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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