Variant report

Variant	rs603290
Chromosome Location	chr11:75401435-75401436
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11236496	0.89[CEU][hapmap]
rs1219285	0.89[CEU][hapmap]
rs4528358	0.87[CEU][hapmap]
rs4944086	0.88[CEU][hapmap]
rs590550	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs603289	0.89[CEU][hapmap]
rs622403	0.90[ASN][1000 genomes]
rs632786	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs675028	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7106779	0.89[CEU][hapmap]
rs7110142	0.88[CEU][hapmap]
rs7947980	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75399200-75402400	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:75400200-75401800	Enhancers	Primary B cells from cord blood	blood
3	chr11:75400200-75401800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr11:75400600-75401600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr11:75400600-75401800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:75400800-75401800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:75400800-75401800	Enhancers	NHDF-Ad	bronchial
8	chr11:75400800-75401800	Enhancers	Osteobl	bone
9	chr11:75401000-75401600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:75401000-75401800	Enhancers	HSMM	muscle
11	chr11:75401200-75401600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:75401200-75401600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:75401200-75401800	Flanking Active TSS	GM12878-XiMat	blood
14	chr11:75401400-75401800	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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