Variant report

Variant	rs675028
Chromosome Location	chr11:75409066-75409067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11236496	0.88[CEU][hapmap]
rs1219285	0.88[CEU][hapmap]
rs4528358	0.85[CEU][hapmap]
rs4944086	0.88[CEU][hapmap];1.00[TSI][hapmap]
rs541993	0.82[TSI][hapmap]
rs546156	0.82[TSI][hapmap]
rs590550	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs603289	0.88[CEU][hapmap]
rs603290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs604694	0.82[TSI][hapmap]
rs622403	0.94[ASN][1000 genomes]
rs632786	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs656007	0.87[TSI][hapmap]
rs660343	0.82[TSI][hapmap]
rs7106779	0.88[CEU][hapmap]
rs7110142	0.88[CEU][hapmap];1.00[TSI][hapmap]
rs7114999	1.00[TSI][hapmap]
rs7947980	0.88[CEU][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs675028	P2RY2	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75408600-75409800	Enhancers	HepG2	liver
2	chr11:75408600-75410200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:75408800-75409400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:75408800-75409400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:75408800-75409600	Enhancers	HMEC	breast
6	chr11:75408800-75409800	Enhancers	Placenta	Placenta
7	chr11:75408800-75410000	Enhancers	NHEK	skin
8	chr11:75408800-75410200	Enhancers	Fetal Intestine Large	intestine
9	chr11:75409000-75409400	Enhancers	Fetal Intestine Small	intestine
10	chr11:75409000-75409800	Enhancers	Hela-S3	cervix
11	chr11:75409000-75410000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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