Variant report

Variant	rs60335005
Chromosome Location	chr5:100177695-100177696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58357158	0.90[AFR][1000 genomes]
rs73159952	1.00[AFR][1000 genomes]
rs73159966	1.00[AFR][1000 genomes]
rs73159967	1.00[AFR][1000 genomes]
rs73159996	1.00[AFR][1000 genomes]
rs73159998	1.00[AFR][1000 genomes]
rs73160000	1.00[AFR][1000 genomes]
rs73162251	1.00[AFR][1000 genomes]
rs73162255	0.90[AFR][1000 genomes]
rs73162266	1.00[AFR][1000 genomes]
rs73162270	1.00[AFR][1000 genomes]
rs73162299	0.90[AFR][1000 genomes]
rs73163627	1.00[AFR][1000 genomes]
rs73163632	1.00[AFR][1000 genomes]
rs73163637	1.00[AFR][1000 genomes]
rs73163654	1.00[AFR][1000 genomes]
rs73163660	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv1834675	chr5:100143084-100535029	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
4	nsv969238	chr5:100174140-100182830	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100147600-100218000	Weak transcription	Thymus	Thymus
2	chr5:100147800-100179000	Weak transcription	Fetal Thymus	thymus
3	chr5:100170600-100179000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:100174000-100190600	Weak transcription	Fetal Lung	lung
5	chr5:100174200-100179200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:100175000-100177800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:100175200-100177800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:100175400-100177800	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr5:100175400-100178200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:100175800-100177800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:100175800-100177800	Enhancers	NHEK	skin
12	chr5:100175800-100178000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:100175800-100178400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr5:100176000-100177800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr5:100176000-100177800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr5:100176000-100177800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr5:100176000-100177800	Enhancers	Primary B cells from cord blood	blood
18	chr5:100176000-100177800	Enhancers	HMEC	breast
19	chr5:100176000-100178000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:100176000-100178800	Flanking Active TSS	GM12878-XiMat	blood
21	chr5:100176200-100177800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr5:100176200-100178200	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr5:100176200-100178200	Enhancers	Primary B cells from peripheral blood	blood
24	chr5:100176400-100177800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:100176400-100177800	Enhancers	Primary hematopoietic stem cells	blood
26	chr5:100176400-100178400	Enhancers	Primary monocytes fromperipheralblood	blood
27	chr5:100176600-100177800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
28	chr5:100176600-100177800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
29	chr5:100176600-100177800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr5:100176600-100177800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:100176600-100177800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr5:100176800-100177800	Enhancers	Primary T cells fromperipheralblood	blood
33	chr5:100177000-100177800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr5:100177000-100178200	Flanking Active TSS	HUVEC	blood vessel
35	chr5:100177400-100177800	Enhancers	Right Atrium	heart
36	chr5:100177400-100182400	Weak transcription	Psoas Muscle	Psoas
37	chr5:100177400-100188400	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr5:100177600-100177800	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr5:100177600-100177800	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
40	chr5:100177600-100177800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr5:100177600-100177800	Active TSS	A549	lung
42	chr5:100177600-100178000	Weak transcription	Placenta	Placenta
43	chr5:100177600-100178400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr5:100177600-100179400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr5:100177600-100179600	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr5:100177600-100180800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr5:100177600-100182400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr5:100177600-100185800	Strong transcription	Dnd41	blood
49	chr5:100177600-100215400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links