Variant report

Variant	rs73163627
Chromosome Location	chr5:100142036-100142037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs58357158	0.90[AFR][1000 genomes]
rs60335005	1.00[AFR][1000 genomes]
rs73159952	1.00[AFR][1000 genomes]
rs73159966	1.00[AFR][1000 genomes]
rs73159967	1.00[AFR][1000 genomes]
rs73159996	1.00[AFR][1000 genomes]
rs73159998	1.00[AFR][1000 genomes]
rs73160000	1.00[AFR][1000 genomes]
rs73162251	1.00[AFR][1000 genomes]
rs73162255	0.90[AFR][1000 genomes]
rs73162266	1.00[AFR][1000 genomes]
rs73162270	1.00[AFR][1000 genomes]
rs73162299	0.90[AFR][1000 genomes]
rs73163632	1.00[AFR][1000 genomes]
rs73163637	1.00[AFR][1000 genomes]
rs73163654	1.00[AFR][1000 genomes]
rs73163660	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021183	chr5:99625857-100221426	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1023765	chr5:99915011-100733755	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:100138400-100142400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:100138400-100142600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr5:100138800-100143800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr5:100139000-100146400	Weak transcription	Primary B cells from cord blood	blood
5	chr5:100139400-100154400	Weak transcription	Fetal Lung	lung
6	chr5:100139400-100155400	Weak transcription	Placenta	Placenta
7	chr5:100139600-100142400	Weak transcription	Dnd41	blood
8	chr5:100139600-100143400	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:100139600-100144400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr5:100139600-100149200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:100140200-100147000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:100140800-100147200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr5:100141800-100147000	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr5:100142000-100143800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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