Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11697322	1.00[ASN][1000 genomes]
rs11699494	1.00[ASN][1000 genomes]
rs13163	1.00[ASN][1000 genomes]
rs16994549	1.00[ASN][1000 genomes]
rs1883933	1.00[ASN][1000 genomes]
rs1883936	1.00[ASN][1000 genomes]
rs57094926	1.00[ASN][1000 genomes]
rs6033914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033923	1.00[ASN][1000 genomes]
rs6033936	1.00[ASN][1000 genomes]
rs6042585	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6042588	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042647	1.00[ASN][1000 genomes]
rs6042676	1.00[ASN][1000 genomes]
rs6042682	1.00[ASN][1000 genomes]
rs6042689	1.00[ASN][1000 genomes]
rs60645920	1.00[ASN][1000 genomes]
rs66715055	1.00[ASN][1000 genomes]
rs715217	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8117719	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522008	chr20:1340390-1638578	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv585206	chr20:1386473-1714362	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv833893	chr20:1414615-1527779	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1471600-1478400	Weak transcription	NHEK	skin
2	chr20:1471600-1478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:1472200-1476000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr20:1472400-1476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr20:1472600-1476200	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr20:1473000-1476000	Enhancers	Primary B cells from cord blood	blood
7	chr20:1473000-1476000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr20:1473000-1479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr20:1474000-1479800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr20:1475400-1480800	Weak transcription	Fetal Thymus	thymus
11	chr20:1475600-1476600	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr20:1475600-1480800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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