Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11697322	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs11699494	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs13163	1.00[ASN][1000 genomes]
rs16994549	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs1883933	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs1883936	1.00[ASN][1000 genomes]
rs57094926	1.00[ASN][1000 genomes]
rs6033911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033914	0.92[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6033923	1.00[ASN][1000 genomes]
rs6033936	1.00[ASN][1000 genomes]
rs6042585	0.92[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6042588	0.92[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6042647	1.00[ASN][1000 genomes]
rs6042676	0.92[CEU][hapmap];1.00[ASN][1000 genomes]
rs6042682	1.00[ASN][1000 genomes]
rs6042689	0.84[CEU][hapmap];1.00[ASN][1000 genomes]
rs60645920	1.00[ASN][1000 genomes]
rs6110193	0.80[YRI][hapmap]
rs66715055	1.00[ASN][1000 genomes]
rs715217	0.84[CEU][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8117719	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522008	chr20:1340390-1638578	Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv585206	chr20:1386473-1714362	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv833893	chr20:1414615-1527779	Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1471600-1478400	Weak transcription	NHEK	skin
2	chr20:1471600-1478800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:1473000-1479000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr20:1474000-1479800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr20:1475400-1480800	Weak transcription	Fetal Thymus	thymus
6	chr20:1475600-1480800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr20:1476000-1480800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr20:1476000-1480800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr20:1476200-1481000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr20:1476200-1481400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr20:1476600-1484000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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