Variant report
| Variant | rs6034213 |
|---|---|
| Chromosome Location | chr20:15510929-15510930 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11697525 | 0.87[CEU][hapmap] |
| rs11697986 | 0.87[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs1345368 | 0.92[YRI][hapmap] |
| rs1547972 | 0.89[CHB][hapmap];0.83[JPT][hapmap] |
| rs16995898 | 1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap] |
| rs1816000 | 0.94[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap] |
| rs2058735 | 0.96[ASN][1000 genomes] |
| rs6043349 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs6043350 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap] |
| rs6043351 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.92[YRI][hapmap] |
| rs6105428 | 0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6110655 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6110663 | 0.93[CEU][hapmap] |
| rs6110672 | 0.86[CEU][hapmap];0.85[EUR][1000 genomes] |
| rs6110677 | 0.86[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs6135432 | 0.92[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs66767980 | 0.95[ASN][1000 genomes] |
| rs73098214 | 0.86[EUR][1000 genomes] |
| rs73098216 | 0.85[EUR][1000 genomes] |
| rs73100236 | 0.86[EUR][1000 genomes] |
| rs9917445 | 1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1062252 | chr20:14964258-15547739 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv544206 | chr20:14964258-15547739 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv833927 | chr20:15362602-15520185 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
