Variant report
Variant | rs6034250 |
---|---|
Chromosome Location | chr20:15646946-15646947 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs1362512 | 0.93[LWK][hapmap];0.82[MKK][hapmap];0.81[YRI][hapmap] |
rs1420433 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.91[JPT][hapmap];0.82[MEX][hapmap] |
rs416842 | 0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes] |
rs417099 | 0.82[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes] |
rs455709 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.97[MKK][hapmap];0.88[TSI][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs456544 | 0.92[CEU][hapmap];0.86[YRI][hapmap] |
rs460411 | 0.85[CHB][hapmap];0.92[JPT][hapmap] |
rs460818 | 0.85[CHB][hapmap];0.92[JPT][hapmap] |
rs464735 | 0.82[CEU][hapmap] |
rs465374 | 0.92[CHB][hapmap];0.84[CHD][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes] |
rs465416 | 0.89[ASN][1000 genomes] |
rs465981 | 0.85[CHB][hapmap];0.92[JPT][hapmap] |
rs6034249 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.97[ASN][1000 genomes] |
rs6043422 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15646800-15647200 | Enhancers | Foreskin Melanocyte Primary Cells skin03 | Skin |