Variant report
Variant | rs6043422 |
---|---|
Chromosome Location | chr20:15649366-15649367 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1420433 | 0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.93[YRI][hapmap] |
rs416842 | 0.85[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap] |
rs417099 | 0.85[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes] |
rs455659 | 0.85[CEU][hapmap] |
rs455709 | 1.00[CHB][hapmap];0.92[JPT][hapmap];0.80[ASN][1000 genomes] |
rs456022 | 0.86[EUR][1000 genomes] |
rs460411 | 1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs460771 | 0.85[CEU][hapmap];0.90[AMR][1000 genomes] |
rs460818 | 0.92[CEU][hapmap];0.85[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs465374 | 0.96[CEU][hapmap];0.92[CHB][hapmap];0.84[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs465416 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs465525 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs465981 | 0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[TSI][hapmap];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6034249 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6034250 | 1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[JPT][hapmap];0.96[ASN][1000 genomes] |
rs6135477 | 0.85[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | esv2751909 | chr20:15489871-15656007 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
3 | nsv833928 | chr20:15619962-15780758 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |