Variant report

Variant	rs6034367
Chromosome Location	chr20:16042351-16042352
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1033858	0.94[CEU][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485543	1.00[ASN][1000 genomes]
rs16997056	1.00[ASN][1000 genomes]
rs17644136	1.00[ASN][1000 genomes]
rs17646021	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41309829	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57792062	1.00[ASN][1000 genomes]
rs6043703	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6043705	0.91[AFR][1000 genomes]
rs6043706	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60854916	1.00[ASN][1000 genomes]
rs6105508	1.00[ASN][1000 genomes]
rs7271371	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092725	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73092737	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73095217	1.00[ASN][1000 genomes]
rs73237726	1.00[ASN][1000 genomes]
rs73237730	1.00[ASN][1000 genomes]
rs8116533	0.94[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8122540	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912184	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912186	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1059778	chr20:15999519-16165895	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv544207	chr20:15999519-16165895	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv585649	chr20:16004320-16066764	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1061301	chr20:16007489-16097070	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16033200-16045000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:16039400-16044400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr20:16039600-16043600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr20:16039600-16045200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr20:16040000-16043400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr20:16040000-16043400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr20:16040000-16043600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr20:16040600-16045200	Weak transcription	Adipose Nuclei	Adipose
9	chr20:16042000-16042400	Enhancers	Colon Smooth Muscle	Colon
10	chr20:16042000-16043200	Enhancers	Duodenum Smooth Muscle	Duodenum
11	chr20:16042000-16047000	Enhancers	Brain Germinal Matrix	brain
12	chr20:16042200-16042400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr20:16042200-16042400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr20:16042200-16042400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr20:16042200-16042400	Enhancers	Fetal Stomach	stomach

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