Variant report

Variant	rs73237730
Chromosome Location	chr20:15989748-15989749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1033858	1.00[ASN][1000 genomes]
rs10485543	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11907606	1.00[ASN][1000 genomes]
rs16996637	1.00[ASN][1000 genomes]
rs16996644	1.00[ASN][1000 genomes]
rs16996657	1.00[ASN][1000 genomes]
rs16997056	1.00[ASN][1000 genomes]
rs175800	1.00[ASN][1000 genomes]
rs175804	1.00[ASN][1000 genomes]
rs17644136	1.00[ASN][1000 genomes]
rs17646021	1.00[ASN][1000 genomes]
rs41309829	1.00[ASN][1000 genomes]
rs57792062	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6034367	1.00[ASN][1000 genomes]
rs6043703	1.00[ASN][1000 genomes]
rs6043706	1.00[ASN][1000 genomes]
rs60854916	1.00[ASN][1000 genomes]
rs6105508	1.00[ASN][1000 genomes]
rs7271371	1.00[ASN][1000 genomes]
rs73092725	1.00[ASN][1000 genomes]
rs73092737	1.00[ASN][1000 genomes]
rs73095217	1.00[ASN][1000 genomes]
rs73237726	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73898513	1.00[ASN][1000 genomes]
rs73898514	1.00[ASN][1000 genomes]
rs8116533	1.00[ASN][1000 genomes]
rs8122540	1.00[ASN][1000 genomes]
rs912184	1.00[ASN][1000 genomes]
rs912186	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1065548	chr20:15971797-16023086	Enhancers Weak transcription Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15979000-16004200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr20:15986200-15990800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr20:15986600-15990600	Weak transcription	Fetal Heart	heart
4	chr20:15987000-15990800	Weak transcription	Brain Germinal Matrix	brain
5	chr20:15987000-15991400	Weak transcription	Fetal Brain Female	brain
6	chr20:15987400-15991800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr20:15987400-15995200	Strong transcription	Primary B cells from cord blood	blood
8	chr20:15988200-15990000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr20:15988800-15989800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr20:15989400-15992000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr20:15989600-15989800	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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