Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10485543	1.00[ASN][1000 genomes]
rs11907606	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16996637	0.84[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16996644	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16996657	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs175800	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs175809	0.80[EUR][1000 genomes]
rs175813	0.90[EUR][1000 genomes]
rs17644136	1.00[ASN][1000 genomes]
rs55848652	1.00[ASN][1000 genomes]
rs57792062	1.00[ASN][1000 genomes]
rs60854916	1.00[ASN][1000 genomes]
rs6105508	1.00[ASN][1000 genomes]
rs7268466	1.00[GIH][hapmap];0.88[TSI][hapmap];0.81[EUR][1000 genomes]
rs73237726	1.00[ASN][1000 genomes]
rs73237730	1.00[ASN][1000 genomes]
rs73898513	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73898514	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8118253	0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs8123881	1.00[GIH][hapmap];0.83[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs175804	BFSP1	cis	cerebellum	SCAN
rs175804	RRBP1	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15830200-15835200	Weak transcription	Brain Angular Gyrus	brain
2	chr20:15831400-15834400	Weak transcription	Brain Germinal Matrix	brain
3	chr20:15832000-15833000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr20:15832200-15832600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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