Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11907606	0.81[EUR][1000 genomes]
rs11907870	0.89[ASN][1000 genomes]
rs11908162	0.89[ASN][1000 genomes]
rs11908210	0.92[ASN][1000 genomes]
rs16996637	0.82[EUR][1000 genomes]
rs16996644	0.85[EUR][1000 genomes]
rs16996657	0.86[EUR][1000 genomes]
rs175800	0.89[EUR][1000 genomes]
rs175804	0.90[EUR][1000 genomes]
rs175809	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2098154	0.94[ASN][1000 genomes]
rs60360268	0.89[ASN][1000 genomes]
rs6043559	0.81[ASN][1000 genomes]
rs6043560	0.81[ASN][1000 genomes]
rs73898513	0.81[EUR][1000 genomes]
rs73898514	0.81[EUR][1000 genomes]
rs73898563	0.89[ASN][1000 genomes]
rs73898564	0.89[ASN][1000 genomes]
rs73898565	0.85[ASN][1000 genomes]
rs8118253	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8123881	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs969741	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv585648	chr20:15807441-15829235	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15815800-15829600	Weak transcription	Fetal Brain Female	brain
2	chr20:15824600-15829400	Weak transcription	Fetal Brain Male	brain

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