Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:15833755..15835595-chr20:15835871..15838244,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11907870	0.95[ASN][1000 genomes]
rs11908162	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11908210	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs175813	0.94[ASN][1000 genomes]
rs3803978	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs6034318	0.89[CHB][hapmap]
rs6034320	1.00[CEU][hapmap]
rs6034321	1.00[CEU][hapmap]
rs6034324	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs60360268	0.95[ASN][1000 genomes]
rs6043600	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs6043604	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs6043605	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs6043606	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs6043609	1.00[CEU][hapmap]
rs6043611	1.00[CEU][hapmap]
rs73898563	0.92[ASN][1000 genomes]
rs73898564	0.95[ASN][1000 genomes]
rs73898565	0.91[ASN][1000 genomes]
rs8118253	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs8123881	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs969741	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15830200-15835200	Weak transcription	Brain Angular Gyrus	brain
2	chr20:15834200-15835400	Enhancers	Primary B cells from peripheral blood	blood
3	chr20:15834400-15835600	Enhancers	Brain Germinal Matrix	brain
4	chr20:15834400-15836600	Enhancers	Fetal Heart	heart
5	chr20:15834600-15836600	Enhancers	Pancreatic Islets	Pancreatic Islet

Quick Search: