Variant report
Variant | rs8118253 |
---|---|
Chromosome Location | chr20:15819926-15819927 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
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No data |
rs_ID | r2[population] |
---|---|
rs11907606 | 0.82[EUR][1000 genomes] |
rs11907870 | 0.82[ASN][1000 genomes] |
rs11908162 | 0.85[ASN][1000 genomes] |
rs11908210 | 0.88[ASN][1000 genomes] |
rs16996637 | 0.92[CEU][hapmap];0.80[EUR][1000 genomes] |
rs16996644 | 0.85[CEU][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes] |
rs16996657 | 0.86[CEU][hapmap];0.85[EUR][1000 genomes] |
rs175800 | 0.84[CEU][hapmap];0.88[EUR][1000 genomes] |
rs175804 | 0.82[TSI][hapmap];0.89[EUR][1000 genomes] |
rs175809 | 0.88[EUR][1000 genomes] |
rs175813 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2098154 | 1.00[CHB][hapmap];0.86[ASN][1000 genomes] |
rs6034318 | 0.88[CHB][hapmap] |
rs6034324 | 1.00[JPT][hapmap] |
rs60360268 | 0.82[ASN][1000 genomes] |
rs6043559 | 0.88[ASN][1000 genomes] |
rs6043560 | 0.88[ASN][1000 genomes] |
rs6043600 | 0.93[CHD][hapmap] |
rs6043605 | 0.81[CHD][hapmap] |
rs6043606 | 0.81[CHD][hapmap] |
rs73898513 | 0.82[EUR][1000 genomes] |
rs73898514 | 0.82[EUR][1000 genomes] |
rs73898563 | 0.82[ASN][1000 genomes] |
rs73898564 | 0.82[ASN][1000 genomes] |
rs8123881 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs969741 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
4 | nsv585648 | chr20:15807441-15829235 | Enhancers Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15815800-15829600 | Weak transcription | Fetal Brain Female | brain |