Variant report
Variant | rs16996637 |
---|---|
Chromosome Location | chr20:15809996-15809997 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs10485543 | 1.00[ASN][1000 genomes] |
rs11907606 | 0.83[CEU][hapmap];0.91[YRI][hapmap];0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12106196 | 1.00[CHD][hapmap] |
rs16996644 | 0.82[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs16996657 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs175800 | 0.84[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs175804 | 0.84[CEU][hapmap];1.00[GIH][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs175813 | 0.82[EUR][1000 genomes] |
rs55848652 | 1.00[ASN][1000 genomes] |
rs57792062 | 1.00[ASN][1000 genomes] |
rs60605413 | 0.85[AFR][1000 genomes] |
rs60854916 | 1.00[ASN][1000 genomes] |
rs6105508 | 1.00[ASN][1000 genomes] |
rs7268466 | 1.00[GIH][hapmap];0.83[EUR][1000 genomes] |
rs73237726 | 1.00[ASN][1000 genomes] |
rs73237730 | 1.00[ASN][1000 genomes] |
rs73898513 | 0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs73898514 | 0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8118253 | 0.92[CEU][hapmap];0.80[EUR][1000 genomes] |
rs8123881 | 0.92[CEU][hapmap];1.00[GIH][hapmap] |
Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv519883 | chr20:15738086-15817106 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
3 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | esv2754713 | chr20:15785800-15816800 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv585645 | chr20:15796051-15817106 | Enhancers Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | nsv458935 | chr20:15796658-15816595 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | nsv585646 | chr20:15796658-15816595 | Enhancers Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
9 | nsv585647 | chr20:15802809-15817106 | Enhancers Weak transcription Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
10 | nsv585648 | chr20:15807441-15829235 | Enhancers Bivalent Enhancer Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15806000-15812000 | Weak transcription | Gastric | stomach |