Variant report

Variant	rs11908210
Chromosome Location	chr20:15830797-15830798
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11907870	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11908162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs175813	0.92[ASN][1000 genomes]
rs2098154	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34591655	0.81[AFR][1000 genomes]
rs60360268	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73898563	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73898564	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73898565	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8118253	0.88[ASN][1000 genomes]
rs8123881	0.88[ASN][1000 genomes]
rs969741	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15830200-15831400	Enhancers	Brain Germinal Matrix	brain
2	chr20:15830200-15832000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr20:15830200-15832200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:15830200-15835200	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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