Variant report
| Variant | rs34591655 |
|---|---|
| Chromosome Location | chr20:15840456-15840457 |
| allele | -/A |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11908162 | 0.81[AFR][1000 genomes] |
| rs11908210 | 0.81[AFR][1000 genomes] |
| rs12480694 | 0.82[AMR][1000 genomes] |
| rs12481296 | 0.82[AMR][1000 genomes] |
| rs12624919 | 0.89[EUR][1000 genomes] |
| rs16996627 | 0.82[AMR][1000 genomes] |
| rs16996681 | 0.84[AMR][1000 genomes] |
| rs4814404 | 0.82[AMR][1000 genomes] |
| rs4814405 | 0.82[AMR][1000 genomes] |
| rs4814406 | 0.82[AMR][1000 genomes] |
| rs6131728 | 0.82[AMR][1000 genomes] |
| rs6131731 | 0.82[AMR][1000 genomes] |
| rs6131733 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6131734 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6135567 | 0.84[AMR][1000 genomes] |
| rs6135568 | 0.84[AMR][1000 genomes] |
| rs6135569 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs6135570 | 0.84[AMR][1000 genomes] |
| rs6135571 | 0.84[AMR][1000 genomes] |
| rs6135572 | 0.80[EUR][1000 genomes] |
| rs6135574 | 0.80[EUR][1000 genomes] |
| rs7268461 | 0.84[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs73898562 | 0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:15837600-15840800 | Enhancers | Primary B cells from peripheral blood | blood |
| 2 | chr20:15838000-15840600 | Enhancers | Primary B cells from cord blood | blood |
