Variant report

Variant	rs6135569
Chromosome Location	chr20:15829811-15829812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12624919	0.82[EUR][1000 genomes]
rs16996681	0.82[EUR][1000 genomes]
rs175806	0.99[ASN][1000 genomes]
rs175807	0.99[ASN][1000 genomes]
rs175811	0.96[ASN][1000 genomes]
rs34591655	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6079984	0.84[ASN][1000 genomes]
rs6131734	0.87[EUR][1000 genomes]
rs6135567	0.82[EUR][1000 genomes]
rs6135570	0.82[EUR][1000 genomes]
rs6135571	0.82[EUR][1000 genomes]
rs73898562	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15829200-15830200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr20:15829400-15830000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr20:15829400-15830000	Enhancers	Fetal Brain Male	brain
4	chr20:15829400-15830200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr20:15829400-15830200	Enhancers	Brain Substantia Nigra	brain
6	chr20:15829600-15830000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr20:15829600-15830000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr20:15829600-15830200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr20:15829600-15830200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr20:15829600-15830200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr20:15829600-15830200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr20:15829600-15830200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr20:15829600-15830200	Flanking Active TSS	Brain Anterior Caudate	brain
14	chr20:15829600-15830200	Flanking Active TSS	Brain Cingulate Gyrus	brain
15	chr20:15829600-15830200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr20:15829800-15830200	Flanking Active TSS	Brain Angular Gyrus	brain
17	chr20:15829800-15830200	Flanking Active TSS	Brain Germinal Matrix	brain
18	chr20:15829800-15830200	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr20:15829800-15830200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
20	chr20:15829800-15830400	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr20:15829800-15830400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr20:15829800-15830400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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