Variant report

Variant	rs6079984
Chromosome Location	chr20:15821875-15821876
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs175806	0.85[ASN][1000 genomes]
rs175807	0.84[ASN][1000 genomes]
rs175811	0.88[ASN][1000 genomes]
rs2191520	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs2191521	0.95[CEU][hapmap];0.83[EUR][1000 genomes]
rs2191522	0.90[CEU][hapmap]
rs2327969	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs4814403	0.95[CEU][hapmap]
rs6034298	0.90[CEU][hapmap]
rs6043561	0.84[CEU][hapmap]
rs6043564	0.90[CEU][hapmap]
rs6043565	0.90[CEU][hapmap]
rs6043574	0.87[EUR][1000 genomes]
rs6074958	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs6079990	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs6131730	0.80[CEU][hapmap]
rs6135564	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs6135569	0.84[ASN][1000 genomes]
rs6514621	0.88[EUR][1000 genomes]
rs6514622	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv585648	chr20:15807441-15829235	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15815800-15829600	Weak transcription	Fetal Brain Female	brain
2	chr20:15820800-15822000	Enhancers	Colon Smooth Muscle	Colon
3	chr20:15821000-15822000	Enhancers	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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