Variant report

Variant	rs6135564
Chromosome Location	chr20:15812247-15812248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2191520	0.81[CEU][hapmap];0.85[EUR][1000 genomes]
rs2191521	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs2191522	1.00[CEU][hapmap]
rs2327969	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs4814403	0.84[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6034298	0.89[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6043561	0.84[CEU][hapmap]
rs6043564	0.88[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6043565	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs6043574	0.82[EUR][1000 genomes]
rs6074958	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs6079984	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs6079990	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs6131730	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs6514621	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv519883	chr20:15738086-15817106	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2754713	chr20:15785800-15816800	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv585645	chr20:15796051-15817106	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv458935	chr20:15796658-15816595	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv585646	chr20:15796658-15816595	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv585647	chr20:15802809-15817106	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	nsv585648	chr20:15807441-15829235	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15811400-15812400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr20:15811400-15812400	Enhancers	NHEK	skin
3	chr20:15811600-15812400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:15811600-15812400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr20:15811600-15812600	Enhancers	HMEC	breast
6	chr20:15812000-15812400	Enhancers	Gastric	stomach
7	chr20:15812200-15812400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr20:15812200-15812400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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