Variant report

Variant	rs6079990
Chromosome Location	chr20:15833245-15833246
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2191520	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs2191521	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs2191522	0.84[CEU][hapmap];0.82[CHB][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap]
rs2327969	0.88[ASW][hapmap];0.96[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4814403	0.85[CEU][hapmap];0.80[EUR][1000 genomes]
rs6034298	0.81[CEU][hapmap]
rs6043564	0.81[CEU][hapmap];0.82[GIH][hapmap];0.81[TSI][hapmap]
rs6043565	0.81[CEU][hapmap]
rs6043574	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6074958	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6079984	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs6079992	0.81[CEU][hapmap]
rs6131730	0.84[CEU][hapmap];0.82[CHB][hapmap]
rs6135564	0.84[CEU][hapmap];0.82[EUR][1000 genomes]
rs6135575	0.80[MEX][hapmap]
rs6514621	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6514622	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15830200-15835200	Weak transcription	Brain Angular Gyrus	brain
2	chr20:15831400-15834400	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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