Variant report
Variant | rs6135575 |
---|---|
Chromosome Location | chr20:15848879-15848880 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
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rs_ID | r2[population] |
---|---|
rs1558381 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1558382 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs1558383 | 0.82[AFR][1000 genomes] |
rs2109537 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2109538 | 0.92[YRI][hapmap];0.82[AFR][1000 genomes] |
rs2191522 | 0.82[GIH][hapmap] |
rs2327969 | 0.86[GIH][hapmap] |
rs6043569 | 0.87[GIH][hapmap] |
rs6074958 | 0.89[GIH][hapmap] |
rs6079990 | 0.80[MEX][hapmap] |
rs6080000 | 0.96[YRI][hapmap];0.84[AFR][1000 genomes] |
rs6080001 | 0.84[AFR][1000 genomes] |
rs6105480 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6110803 | 0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6110807 | 0.84[AFR][1000 genomes] |
rs6110808 | 0.81[AFR][1000 genomes] |
rs6110809 | 0.84[AFR][1000 genomes] |
rs6135577 | 0.91[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15840600-15855600 | Weak transcription | Primary B cells from cord blood | blood |