Variant report
Variant | rs1558383 |
---|---|
Chromosome Location | chr20:15844918-15844919 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1558381 | 0.83[AFR][1000 genomes] |
rs175796 | 0.84[EUR][1000 genomes] |
rs175801 | 0.88[EUR][1000 genomes] |
rs175803 | 0.82[EUR][1000 genomes] |
rs175805 | 0.87[EUR][1000 genomes] |
rs175808 | 0.88[EUR][1000 genomes] |
rs175810 | 0.82[EUR][1000 genomes] |
rs175814 | 0.81[EUR][1000 genomes] |
rs175815 | 0.81[EUR][1000 genomes] |
rs175816 | 0.81[EUR][1000 genomes] |
rs175817 | 0.81[EUR][1000 genomes] |
rs2109537 | 0.86[AFR][1000 genomes] |
rs2109538 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2191516 | 0.81[EUR][1000 genomes] |
rs2327970 | 0.82[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs2327971 | 0.89[EUR][1000 genomes] |
rs6034303 | 0.81[EUR][1000 genomes] |
rs6034304 | 0.81[EUR][1000 genomes] |
rs6034308 | 0.89[EUR][1000 genomes] |
rs6043572 | 0.81[EUR][1000 genomes] |
rs6043581 | 0.89[EUR][1000 genomes] |
rs6074956 | 0.81[EUR][1000 genomes] |
rs6079993 | 0.92[EUR][1000 genomes] |
rs6079997 | 0.83[EUR][1000 genomes] |
rs6080000 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6080001 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6105480 | 0.86[AFR][1000 genomes] |
rs6110807 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6110808 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6110809 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6135575 | 0.82[AFR][1000 genomes] |
rs6135577 | 0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15840600-15855600 | Weak transcription | Primary B cells from cord blood | blood |
2 | chr20:15842800-15847600 | Weak transcription | Colon Smooth Muscle | Colon |
3 | chr20:15843400-15845000 | Enhancers | Pancreatic Islets | Pancreatic Islet |