Variant report

Variant	rs175803
Chromosome Location	chr20:15835276-15835277
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:15833755..15835595-chr20:15835871..15838244,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1558383	0.82[EUR][1000 genomes]
rs175793	0.84[GIH][hapmap]
rs175796	0.89[EUR][1000 genomes]
rs175801	0.89[CEU][hapmap];0.94[EUR][1000 genomes]
rs175805	0.83[CEU][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes]
rs175808	0.89[CEU][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs175810	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs175812	1.00[YRI][hapmap]
rs175814	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs175815	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs175816	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs175817	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs175818	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2041420	0.90[LWK][hapmap]
rs2109538	0.82[EUR][1000 genomes]
rs2191516	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2191517	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2191518	0.86[CEU][hapmap]
rs2327970	0.87[EUR][1000 genomes]
rs2327971	0.81[EUR][1000 genomes]
rs4555415	0.90[LWK][hapmap]
rs6034296	0.82[CEU][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6034297	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6034302	0.87[AFR][1000 genomes]
rs6034303	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6034304	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6034308	0.89[EUR][1000 genomes]
rs6043560	0.84[GIH][hapmap]
rs6043570	0.90[LWK][hapmap]
rs6043571	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6043572	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6043581	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs6074955	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6074956	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6074960	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074962	0.85[GIH][hapmap]
rs6079985	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6079986	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6079993	0.86[EUR][1000 genomes]
rs6079997	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6135565	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6135577	0.83[EUR][1000 genomes]
rs761684	0.85[GIH][hapmap]
rs978767	0.90[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15834200-15835400	Enhancers	Primary B cells from peripheral blood	blood
2	chr20:15834400-15835600	Enhancers	Brain Germinal Matrix	brain
3	chr20:15834400-15836600	Enhancers	Fetal Heart	heart
4	chr20:15834600-15836600	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr20:15835000-15835400	Enhancers	Fetal Muscle Leg	muscle
6	chr20:15835200-15835800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr20:15835200-15835800	Enhancers	Brain Angular Gyrus	brain

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