Variant report
Variant | rs175805 |
---|---|
Chromosome Location | chr20:15832282-15832283 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1558383 | 0.87[EUR][1000 genomes] |
rs175796 | 0.88[EUR][1000 genomes] |
rs175801 | 0.94[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs175803 | 0.83[CEU][hapmap];0.92[TSI][hapmap];0.94[EUR][1000 genomes] |
rs175808 | 0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs175810 | 0.83[CEU][hapmap];0.85[TSI][hapmap];0.94[EUR][1000 genomes] |
rs175814 | 0.93[EUR][1000 genomes] |
rs175815 | 0.93[EUR][1000 genomes] |
rs175816 | 0.82[CEU][hapmap];0.93[EUR][1000 genomes] |
rs175817 | 0.82[CEU][hapmap];0.93[EUR][1000 genomes] |
rs175818 | 0.82[CEU][hapmap];0.92[EUR][1000 genomes] |
rs2109538 | 0.87[EUR][1000 genomes] |
rs2191516 | 0.83[CEU][hapmap];0.93[EUR][1000 genomes] |
rs2191517 | 0.81[CEU][hapmap];0.92[EUR][1000 genomes] |
rs2327970 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2327971 | 0.85[EUR][1000 genomes] |
rs6034297 | 0.81[CEU][hapmap];0.83[EUR][1000 genomes] |
rs6034303 | 0.82[CEU][hapmap];0.93[EUR][1000 genomes] |
rs6034304 | 0.82[CEU][hapmap];0.93[EUR][1000 genomes] |
rs6034308 | 0.95[EUR][1000 genomes] |
rs6043571 | 0.83[CEU][hapmap];0.92[EUR][1000 genomes] |
rs6043572 | 0.82[CEU][hapmap];0.93[EUR][1000 genomes] |
rs6043581 | 0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs6074955 | 0.92[EUR][1000 genomes] |
rs6074956 | 0.82[CEU][hapmap];0.93[EUR][1000 genomes] |
rs6074960 | 0.86[EUR][1000 genomes] |
rs6079985 | 0.92[EUR][1000 genomes] |
rs6079986 | 0.92[EUR][1000 genomes] |
rs6079993 | 0.83[CEU][hapmap];0.81[CHB][hapmap];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6079997 | 0.89[EUR][1000 genomes] |
rs6080000 | 0.83[EUR][1000 genomes] |
rs6080001 | 0.83[EUR][1000 genomes] |
rs6110807 | 0.83[EUR][1000 genomes] |
rs6110808 | 0.83[EUR][1000 genomes] |
rs6110809 | 0.83[EUR][1000 genomes] |
rs6135565 | 0.83[CEU][hapmap];0.83[EUR][1000 genomes] |
rs6135577 | 0.88[EUR][1000 genomes] |
rs73614471 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869328 | chr20:15325423-16213898 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
2 | nsv833929 | chr20:15765372-15977337 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv3447866 | chr20:15799286-16115291 | Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr20:15830200-15835200 | Weak transcription | Brain Angular Gyrus | brain |
2 | chr20:15831400-15834400 | Weak transcription | Brain Germinal Matrix | brain |
3 | chr20:15832000-15833000 | Enhancers | H9 Derived Neuron Cultured Cells | ES cell derived |
4 | chr20:15832200-15832600 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |