Variant report

Variant	rs6043581
Chromosome Location	chr20:15842518-15842519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1558383	0.89[EUR][1000 genomes]
rs175796	0.89[EUR][1000 genomes]
rs175801	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs175803	0.83[CEU][hapmap];0.89[EUR][1000 genomes]
rs175805	0.88[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs175808	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs175810	0.89[EUR][1000 genomes]
rs175814	0.88[EUR][1000 genomes]
rs175815	0.88[EUR][1000 genomes]
rs175816	0.88[EUR][1000 genomes]
rs175817	0.88[EUR][1000 genomes]
rs175818	0.87[EUR][1000 genomes]
rs2109538	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs2191516	0.88[EUR][1000 genomes]
rs2191517	0.87[EUR][1000 genomes]
rs2327970	0.94[EUR][1000 genomes]
rs2327971	0.89[EUR][1000 genomes]
rs6034297	0.80[EUR][1000 genomes]
rs6034303	0.88[EUR][1000 genomes]
rs6034304	0.88[EUR][1000 genomes]
rs6034308	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6043571	0.87[EUR][1000 genomes]
rs6043572	0.88[EUR][1000 genomes]
rs6074955	0.87[EUR][1000 genomes]
rs6074956	0.88[EUR][1000 genomes]
rs6074960	0.90[EUR][1000 genomes]
rs6074962	1.00[CHB][hapmap]
rs6079985	0.87[EUR][1000 genomes]
rs6079986	0.87[EUR][1000 genomes]
rs6079993	0.84[CEU][hapmap];0.93[EUR][1000 genomes]
rs6079997	0.93[EUR][1000 genomes]
rs6080000	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs6080001	0.84[EUR][1000 genomes]
rs6080007	1.00[CHB][hapmap]
rs6080008	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs6110807	0.85[EUR][1000 genomes]
rs6110808	0.85[EUR][1000 genomes]
rs6110809	0.85[EUR][1000 genomes]
rs6135565	0.80[EUR][1000 genomes]
rs6135577	0.89[EUR][1000 genomes]
rs62196588	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15840600-15855600	Weak transcription	Primary B cells from cord blood	blood

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