Variant report

Variant	rs2109538
Chromosome Location	chr20:15848073-15848074
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1558381	0.83[AFR][1000 genomes]
rs1558383	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs175796	0.84[EUR][1000 genomes]
rs175801	0.88[EUR][1000 genomes]
rs175803	0.82[EUR][1000 genomes]
rs175805	0.87[EUR][1000 genomes]
rs175808	0.88[EUR][1000 genomes]
rs175810	0.82[EUR][1000 genomes]
rs175814	0.81[EUR][1000 genomes]
rs175815	0.81[EUR][1000 genomes]
rs175816	0.81[EUR][1000 genomes]
rs175817	0.81[EUR][1000 genomes]
rs2109537	0.86[AFR][1000 genomes]
rs2191516	0.81[EUR][1000 genomes]
rs2327970	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2327971	0.89[EUR][1000 genomes]
rs6034303	0.81[EUR][1000 genomes]
rs6034304	0.81[EUR][1000 genomes]
rs6034308	0.89[EUR][1000 genomes]
rs6043572	0.81[EUR][1000 genomes]
rs6043581	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs6074956	0.81[EUR][1000 genomes]
rs6079993	0.90[CEU][hapmap];0.92[EUR][1000 genomes]
rs6079997	0.83[EUR][1000 genomes]
rs6080000	1.00[CEU][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6080001	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6105480	0.86[AFR][1000 genomes]
rs6110807	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6110808	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6110809	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6135575	0.92[YRI][hapmap];0.82[AFR][1000 genomes]
rs6135577	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15840600-15855600	Weak transcription	Primary B cells from cord blood	blood
2	chr20:15847400-15848200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links