Variant report

Variant	rs175808
Chromosome Location	chr20:15829320-15829321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1558383	0.88[EUR][1000 genomes]
rs175793	0.80[CHD][hapmap]
rs175796	0.89[EUR][1000 genomes]
rs175801	1.00[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs175803	0.89[CEU][hapmap];0.93[TSI][hapmap];0.94[EUR][1000 genomes]
rs175805	0.94[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs175810	0.85[TSI][hapmap];0.94[EUR][1000 genomes]
rs175814	0.92[EUR][1000 genomes]
rs175815	0.92[EUR][1000 genomes]
rs175816	0.92[EUR][1000 genomes]
rs175817	0.92[EUR][1000 genomes]
rs175818	0.91[EUR][1000 genomes]
rs2109538	0.88[EUR][1000 genomes]
rs2191516	0.92[EUR][1000 genomes]
rs2191517	0.91[EUR][1000 genomes]
rs2327970	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2327971	0.85[EUR][1000 genomes]
rs6034297	0.83[EUR][1000 genomes]
rs6034303	0.92[EUR][1000 genomes]
rs6034304	0.92[EUR][1000 genomes]
rs6034308	0.96[EUR][1000 genomes]
rs6043571	0.91[EUR][1000 genomes]
rs6043572	0.92[EUR][1000 genomes]
rs6043581	0.94[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6074955	0.91[EUR][1000 genomes]
rs6074956	0.92[EUR][1000 genomes]
rs6074960	0.87[EUR][1000 genomes]
rs6079985	0.91[EUR][1000 genomes]
rs6079986	0.91[EUR][1000 genomes]
rs6079993	0.81[CHB][hapmap];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6079997	0.90[EUR][1000 genomes]
rs6080000	0.84[EUR][1000 genomes]
rs6080001	0.83[EUR][1000 genomes]
rs6110807	0.84[EUR][1000 genomes]
rs6110808	0.84[EUR][1000 genomes]
rs6110809	0.84[EUR][1000 genomes]
rs6135565	0.83[EUR][1000 genomes]
rs6135577	0.89[EUR][1000 genomes]
rs73614471	0.84[ASN][1000 genomes]
rs761684	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15815800-15829600	Weak transcription	Fetal Brain Female	brain
2	chr20:15824600-15829400	Weak transcription	Fetal Brain Male	brain
3	chr20:15828600-15829800	Enhancers	Brain Germinal Matrix	brain
4	chr20:15829000-15829800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr20:15829200-15830200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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