Variant report

Variant	rs978767
Chromosome Location	chr20:15819080-15819081
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs12480694	0.81[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs12481296	0.82[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs16996627	0.88[JPT][hapmap]
rs16996681	0.82[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs175803	0.90[LWK][hapmap]
rs175810	0.90[LWK][hapmap]
rs175814	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs175815	0.86[AFR][1000 genomes]
rs175816	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs175817	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs175818	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2041420	1.00[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2191516	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2191517	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs2191518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2191519	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2327968	0.82[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs2876414	0.82[CHB][hapmap];0.86[CHD][hapmap];0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs4555415	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4814404	0.82[CHB][hapmap];0.90[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes]
rs4814405	0.93[ASN][1000 genomes]
rs4814406	0.81[CHB][hapmap];0.82[JPT][hapmap];0.91[ASN][1000 genomes]
rs6034299	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6034302	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6034303	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6034304	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6043561	0.94[CHB][hapmap];0.93[CHD][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6043569	0.94[CEU][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6043570	0.86[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6043571	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6043572	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6074955	0.86[AFR][1000 genomes]
rs6074956	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs6079982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6079983	0.94[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6079985	0.86[AFR][1000 genomes]
rs6079986	0.86[AFR][1000 genomes]
rs6131728	0.88[JPT][hapmap]
rs6131729	0.88[JPT][hapmap]
rs6131731	0.81[CHB][hapmap];0.88[JPT][hapmap];0.89[ASN][1000 genomes]
rs6131733	0.88[JPT][hapmap]
rs6135567	0.85[ASN][1000 genomes]
rs6135568	0.88[ASN][1000 genomes]
rs6135570	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs6135571	0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs6135574	0.88[JPT][hapmap]
rs978768	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv585648	chr20:15807441-15829235	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15815800-15829600	Weak transcription	Fetal Brain Female	brain

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