Variant report

Variant	rs6135567
Chromosome Location	chr20:15829568-15829569
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12480694	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12481296	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16996627	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16996681	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2041420	0.88[ASN][1000 genomes]
rs2191518	0.85[ASN][1000 genomes]
rs2327968	0.87[ASN][1000 genomes]
rs2876414	0.90[ASN][1000 genomes]
rs34591655	0.84[AMR][1000 genomes]
rs4555415	0.85[ASN][1000 genomes]
rs4814404	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4814405	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4814406	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6034299	0.84[ASN][1000 genomes]
rs6034302	0.89[ASN][1000 genomes]
rs6043561	0.82[ASN][1000 genomes]
rs6043570	0.84[ASN][1000 genomes]
rs6079982	0.87[ASN][1000 genomes]
rs6079983	0.87[ASN][1000 genomes]
rs6131728	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6131729	0.80[ASN][1000 genomes]
rs6131731	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6131733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6135568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6135569	0.82[EUR][1000 genomes]
rs6135570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6135571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6135572	0.89[EUR][1000 genomes]
rs6135574	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7268461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs978767	0.85[ASN][1000 genomes]
rs978768	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15815800-15829600	Weak transcription	Fetal Brain Female	brain
2	chr20:15828600-15829800	Enhancers	Brain Germinal Matrix	brain
3	chr20:15829000-15829800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr20:15829200-15830200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr20:15829400-15829600	Enhancers	Brain Anterior Caudate	brain
6	chr20:15829400-15829600	Enhancers	Brain Cingulate Gyrus	brain
7	chr20:15829400-15829800	Enhancers	Brain Angular Gyrus	brain
8	chr20:15829400-15829800	Enhancers	Brain Hippocampus Middle	brain
9	chr20:15829400-15829800	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr20:15829400-15830000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr20:15829400-15830000	Enhancers	Fetal Brain Male	brain
12	chr20:15829400-15830200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr20:15829400-15830200	Enhancers	Brain Substantia Nigra	brain

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