Variant report

Variant	rs6135572
Chromosome Location	chr20:15842367-15842368
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16996627	0.80[EUR][1000 genomes]
rs16996681	0.89[EUR][1000 genomes]
rs34591655	0.80[EUR][1000 genomes]
rs6131728	0.80[EUR][1000 genomes]
rs6131733	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs6131734	0.82[EUR][1000 genomes]
rs6131737	0.82[CEU][hapmap]
rs6135567	0.89[EUR][1000 genomes]
rs6135568	0.87[EUR][1000 genomes]
rs6135570	0.89[EUR][1000 genomes]
rs6135571	0.89[EUR][1000 genomes]
rs6135574	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6135588	0.82[CEU][hapmap]
rs6135592	0.82[CEU][hapmap]
rs6135593	0.82[CEU][hapmap]
rs6135594	0.82[CEU][hapmap]
rs7268461	0.97[EUR][1000 genomes]
rs73898562	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15840600-15855600	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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