Variant report

Variant	rs6135593
Chromosome Location	chr20:15877027-15877028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs16996627	0.82[JPT][hapmap]
rs4814406	1.00[CEU][hapmap]
rs60190468	0.82[ASN][1000 genomes]
rs6080024	0.88[JPT][hapmap]
rs6080044	0.88[JPT][hapmap]
rs6080063	0.83[JPT][hapmap]
rs6131728	0.82[JPT][hapmap]
rs6131733	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs6131735	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6131737	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6131739	0.82[ASN][1000 genomes]
rs6131740	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6131741	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6135572	0.82[CEU][hapmap]
rs6135574	0.82[CEU][hapmap];0.82[JPT][hapmap]
rs6135583	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6135584	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6135585	0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6135587	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6135588	1.00[CEU][hapmap];0.81[CHB][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6135592	1.00[CEU][hapmap];0.88[CHB][hapmap];0.88[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6135594	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6135595	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6135598	0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6135600	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6135601	0.82[AMR][1000 genomes]
rs6135602	0.88[JPT][hapmap]
rs6135603	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6135604	0.89[JPT][hapmap];0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6135605	0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6135606	0.82[ASN][1000 genomes]
rs6135607	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6135608	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs6135613	0.82[ASN][1000 genomes]
rs6135614	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8183396	0.87[CHB][hapmap];0.94[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15875400-15877200	Enhancers	Primary hematopoietic stem cells	blood
2	chr20:15875600-15877200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr20:15875800-15877200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr20:15876000-15877200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:15876400-15880800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr20:15876400-15883200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr20:15876600-15877600	Enhancers	Primary B cells from cord blood	blood
8	chr20:15876800-15880600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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