Variant report

Variant	rs6135607
Chromosome Location	chr20:15909830-15909831
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr20:15909784-15909942	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
MACROD2	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12624676	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2281418	0.93[YRI][hapmap];0.94[AMR][1000 genomes]
rs58630549	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59581588	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60190468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6074979	0.86[AMR][1000 genomes]
rs6074980	0.92[AMR][1000 genomes]
rs6074983	0.86[ASN][1000 genomes]
rs6080024	0.83[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6080032	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6080044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6080048	0.93[YRI][hapmap];0.94[AMR][1000 genomes]
rs6080050	0.92[AMR][1000 genomes]
rs6080052	0.92[AMR][1000 genomes]
rs6080055	0.82[AMR][1000 genomes]
rs6080056	0.82[AMR][1000 genomes]
rs6080057	0.82[AMR][1000 genomes]
rs6080058	0.81[CHB][hapmap];0.82[AMR][1000 genomes]
rs6080063	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs6080064	0.89[ASN][1000 genomes]
rs6105492	0.83[EUR][1000 genomes]
rs6110832	0.83[EUR][1000 genomes]
rs6110836	0.83[EUR][1000 genomes]
rs6110847	0.92[AMR][1000 genomes]
rs6110848	0.90[AMR][1000 genomes]
rs6131738	0.83[EUR][1000 genomes]
rs6131739	1.00[CEU][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6131740	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6131741	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6131743	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6131745	0.85[AMR][1000 genomes]
rs6131747	0.80[AMR][1000 genomes]
rs6131749	0.88[ASN][1000 genomes]
rs6131750	0.89[ASN][1000 genomes]
rs6135593	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs6135594	0.93[JPT][hapmap]
rs6135595	0.80[ASN][1000 genomes]
rs6135598	0.81[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6135600	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6135601	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6135602	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6135603	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6135604	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6135605	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6135606	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6135608	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6135612	0.83[EUR][1000 genomes]
rs6135613	0.98[ASN][1000 genomes]
rs6135614	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6135620	0.85[ASN][1000 genomes]
rs766970	0.80[ASN][1000 genomes]
rs8183396	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs9967921	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15884400-15917400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr20:15904800-15916200	Weak transcription	GM12878-XiMat	blood
3	chr20:15905800-15911000	Weak transcription	Primary B cells from cord blood	blood
4	chr20:15906800-15911200	Weak transcription	HMEC	breast
5	chr20:15908600-15911200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr20:15909400-15910800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr20:15909600-15910800	Weak transcription	Placenta Amnion	Placenta Amnion

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