Variant report

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1012298	0.82[ASN][1000 genomes]
rs60190468	0.83[EUR][1000 genomes]
rs6034327	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6034328	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6034330	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6043620	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6043624	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6080021	0.92[ASN][1000 genomes]
rs6080023	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6080052	0.82[ASN][1000 genomes]
rs6080055	0.81[ASN][1000 genomes]
rs6080056	0.81[ASN][1000 genomes]
rs6080057	0.81[ASN][1000 genomes]
rs6080058	0.81[ASN][1000 genomes]
rs6105492	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6105498	0.84[AFR][1000 genomes]
rs6110832	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6110836	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6131738	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6131739	0.83[EUR][1000 genomes]
rs6131747	0.81[ASN][1000 genomes]
rs6135602	0.83[EUR][1000 genomes]
rs6135605	0.83[EUR][1000 genomes]
rs6135606	0.83[EUR][1000 genomes]
rs6135607	0.83[EUR][1000 genomes]
rs6135608	0.83[EUR][1000 genomes]
rs6135612	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6135621	0.81[ASN][1000 genomes]
rs722337	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs766970	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869328	chr20:15325423-16213898	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv833929	chr20:15765372-15977337	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3447866	chr20:15799286-16115291	Enhancers Genic enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:15912000-15930200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr20:15917400-15918000	Enhancers	Primary B cells from cord blood	blood
3	chr20:15917400-15918000	Enhancers	Primary B cells from peripheral blood	blood
4	chr20:15917400-15918200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr20:15917400-15918200	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr20:15917400-15918200	Enhancers	GM12878-XiMat	blood
7	chr20:15917600-15918000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr20:15917600-15918200	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr20:15917600-15918200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr20:15917600-15918400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr20:15917800-15918200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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